Index

Symbols

--A3 snakevir-make_config command line option, [1] --A5 snakevir-make_config command line option, [1] --account snakevir-edit_cluster command line option, [1] --config snakevir-run command line option --database snakevir-install_cluster command line option, [1] --edit snakevir-edit_cluster command line option, [1] --ext snakevir-make_config command line option, [1] --fastq snakevir-make_config command line option, [1] --host_genome snakevir-make_config command line option, [1] --name snakevir-make_config command line option, [1] --output snakevir-make_config command line option, [1] --output_directory snakevir-make_config command line option, [1] --partition snakevir-edit_cluster command line option, [1] --path snakevir-install_cluster command line option, [1] --path_blast_nt snakevir-make_config command line option, [1] --path_diamond_nr snakevir-make_config command line option, [1] --r1 snakevir-make_config command line option, [1]

--r2 snakevir-make_config command line option, [1] --skip snakevir-install_cluster command line option, [1] --tool snakevir-install_cluster command line option, [1] --version snakevir command line option -a snakevir-edit_cluster command line option, [1] -c snakevir-run command line option -d snakevir-install_cluster command line option, [1] snakevir-make_config command line option, [1] -e snakevir-edit_cluster command line option, [1] -f snakevir-make_config command line option, [1] -g snakevir-make_config command line option, [1] -n snakevir-make_config command line option, [1] -o snakevir-make_config command line option, [1] -p snakevir-edit_cluster command line option, [1] snakevir-install_cluster command line option, [1] -s snakevir-install_cluster command line option, [1] -t snakevir-install_cluster command line option, [1]

O

OTHER_SNAKEMAKE_OPTION snakevir-run command line option

S

snakevir command line option --version snakevir-edit_cluster command line option --account, [1] --edit, [1] --partition, [1] -a, [1] -e, [1] -p, [1] snakevir-install_cluster command line option --database, [1] --path, [1] --skip, [1] --tool, [1] -d, [1] -p, [1] -s, [1] -t, [1] snakevir-make_config command line option --A3, [1] --A5, [1] --ext, [1] --fastq, [1] --host_genome, [1] --name, [1] --output, [1] --output_directory, [1] --path_blast_nt, [1] --path_diamond_nr, [1] --r1, [1] --r2, [1] -d, [1] -f, [1] -g, [1] -n, [1] -o, [1]

snakevir-run command line option --config -c OTHER_SNAKEMAKE_OPTION