Welcome to Snakevir’s documentation!

About snakevir

• Viral metagenomics analyses
  • Read processing
  • Assembly
  • Virus identification
  • Counting table

Install

• Requirements
• Install Snakevir from pypi
• Update Snakevir from pypi
• Steps for HPC distributed cluster installation
  • snakevir install_cluster
  • 1. Adapt your cluster configuration

Defining Workflows

• How to create a workflow
  • snakevir make_config
  • Edit config file
  • Summary table
• How to run the workflow
  • snakevir run
• Output on Snakevir

Project Info

• Citation
• License

API

• snakevir
  • edit_cluster
  • install_cluster
  • make_config

Indices and tables

• Index

• Module Index

• Search Page