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About snakevir

  • Viral metagenomics analyses
    • Read processing
    • Assembly
    • Virus identification
    • Counting table

Install

  • Requirements
  • Install Snakevir from pypi
  • Update Snakevir from pypi
  • Steps for HPC distributed cluster installation
    • snakevir install_cluster
    • 1. Adapt your cluster configuration
      • snakevir edit_cluster

Defining Workflows

  • How to create a workflow
    • snakevir make_config
    • Edit config file
      • 1. Analysis name
      • 2. Fastq params
      • 3. Database path
    • Summary table
  • How to run the workflow
    • snakevir run
  • Output on Snakevir

Project Info

  • Citation
    • Thanks
  • License

API

  • snakevir
    • edit_cluster
    • install_cluster
    • make_config
Snakevir
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